MAIN KEGG FILE RESULTS

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

This table lists the enriched KEGG pathways, number of Entrez IDs in your user data set for the pathway, the corresponding Entrez IDs, and the statistics for the enriched pathway.
The statistic column lists:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, the pathway name is linked to KEGG where the user ids are highlighted, the number of user gene ids is linked to a table with information about the user ids, and the Entrez IDs are linked to Entrez Gene.

PathwayName	#Gene	EntrezGene	Statistics
Homologous recombination	2	6119 7516	C=28;O=2;E=0.07;R=29.62;rawP=0.0021;adjP=0.0189
TGF-beta signaling pathway	2	90 1875	C=84;O=2;E=0.20;R=9.87;rawP=0.0177;adjP=0.0398
Peroxisome	2	55825 10654	C=79;O=2;E=0.19;R=10.50;rawP=0.0157;adjP=0.0398
Endocytosis	3	79720 30011 5979	C=201;O=3;E=0.48;R=6.19;rawP=0.0129;adjP=0.0398
RNA transport	2	23225 1915	C=151;O=2;E=0.36;R=5.49;rawP=0.0517;adjP=0.0842
Metabolic pathways	6	1056 84706 113026 10402 10654 9791	C=1130;O=6;E=2.72;R=2.20;rawP=0.0561;adjP=0.0842
Calcium signaling pathway	2	113026 292	C=177;O=2;E=0.43;R=4.69;rawP=0.0684;adjP=0.0879
Cytokine-cytokine receptor interaction	2	90 1896	C=265;O=2;E=0.64;R=3.13;rawP=0.1344;adjP=0.1512
Pathways in cancer	2	5979 7474	C=326;O=2;E=0.79;R=2.54;rawP=0.1858;adjP=0.1858

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).